PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g24390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 166aa    MW: 18906.8 Da    PI: 10.1247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g24390genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00173658123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C+++Fs+   L  H  +H
  CA06g24390 36 FECKTCKRTFSSFQALGGHRTSH 58
                89**********99998888777 PP

2zf-C2H215.16.4e-0585107123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg+ Fs    L  H+r+H
  CA06g24390  85 HECSICGMEFSMGQALGGHMRRH 107
                 78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-735107No hitNo description
SMARTSM003550.313658IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7643663IPR007087Zinc finger, C2H2
PfamPF139125.1E-113660IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
PfamPF139121.7E-1184109IPR007087Zinc finger, C2H2
SMARTSM003550.05385107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.76485112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MMKRRREYDG QVEAQAMANC LMLLSSIDRD RRVNSFECKT CKRTFSSFQA LGGHRTSHKS  60
SLKSSSIDAE KPLHDKLSKK RKVVHECSIC GMEFSMGQAL GGHMRRHRAS TVNEIEESKE  120
RKIPVLKKSN SSKRIFCVDL NLTPDENDFQ LWHTAPTAPV LRCFF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576245.11e-110PREDICTED: zinc finger protein 667-like
TrEMBLM1CZ273e-81M1CZ27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000779348e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-33C2H2 family protein